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Panel: The powerful data exploration & web app framework for Python
- holoviz
- panel
- dashboards
- control-panels
With Holoviews, your data visualizes itself.
- holoviz
- holoviews
- plotting
A set of useful perceptually uniform colormaps for plotting scientific data
- holoviz
- colorcet
- colormaps
- matplotlib
Clinical Histopathology Imaging Evaluation Foundation Model
Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data
Vision-Language Pathology Foundation Model - Nature Medicine
- bioimage-analysis
- bioimage-informatics
- conch
- foundation-model
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
- histopathology-images
- microscopy
- sliding-windows
- medical-image-analysis
Tools for computational pathology
- machine-learning
- digital-pathology
- computational-pathology
- biomedical-image-processing
CellViT: Vision Transformers for Precise Cell Segmentation and Classification
- ai
- cell
- digitalpathology
- microscopy
Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI (Nature Medicine). PLIP is a large-scale pre-trained model that can be used to extract visual and language features from pathology images and text description. The model is a fine-tuned version of the original CLIP model.
- artificial-intelligence
- clip
- pathology
- vision-and-language
AI-based pathology predicts origins for cancers of unknown primary - Nature
- histology
- pathology
- wsi-images
- histopathology
Python package for image-based profiling
- cytominer
- microscopy
- morphological-profiling
- python
Describe a thing, get a hologram, a 3D model and its parts: built by any AI agent, honestly.
- 3d-visualization
- agent-skills
- ai-agents
- claude-code
An NLP library for Uralic languages such as Finnish, Skolt Sami, Moksha and so on. Also supporting some non-Uralic languages such as Spanish, French, Arabic, Swedish, Norwegian, Russian and English. LLMs, FSTs and More!
- nlp-library
- uralic-languages
- finnish
- sami
The Harmony Python library: a research tool for psychologists to harmonise data and questionnaire items. Open source.
- data-harmonization
- data-science
- depression
- harmonisation
A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources
- bioimage-analysis
- cell-classification
- computer-vision
- digital-pathology
Quanfima (Quantitative Analysis of Fibrous Materials)
- data-analysis
- material-science
- volumetric-data
- morphological-analysis
[DEPRECATED] A package for storing morphological profiling data.