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ObsPy: A Python Toolbox for seismology/seismological observatories.

  • seismology
  • python
  • observatories
  • science

Zentral is a control plane for secure, observable Apple endpoints in enterprises. Configure, observe, and enforce the desired state of every Apple endpoint. Manage that desired state as code through GitOps and Terraform.

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

  • deep-learning
  • protein-sequences
  • protein-structure
  • semi-supervised-learning

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

  • histopathology-images
  • microscopy
  • sliding-windows
  • medical-image-analysis

Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging. The name Kaapana comes from the Hawaiian word kaʻāpana, meaning "distributor" or "part".

PAthological QUpath Obsession - QuPath and Python conversations

  • digital-pathology
  • qupath
  • python

An NLP library for Uralic languages such as Finnish, Skolt Sami, Moksha and so on. Also supporting some non-Uralic languages such as Spanish, French, Arabic, Swedish, Norwegian, Russian and English. LLMs, FSTs and More!

RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation

  • biological-images
  • root
  • painter
  • segmentation