A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
- cookiecutter-data-science
- cookiecutter
- cookiecutter-template
- data-science
Repository Index
47,133 repositories indexed
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Source code for Gramps Genealogical program
- genealogy
- family-tree
- gramps
- python
Biological foundation modeling from molecular to genome scale
ObsPy: A Python Toolbox for seismology/seismological observatories.
- seismology
- python
- observatories
- science
Brian is a free, open source simulator for spiking neural networks.
- python
- neuroscience
- science
- differential-equations
An open-source application for biological image analysis
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
- deep-learning
- protein-sequences
- protein-structure
- semi-supervised-learning
Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging. The name Kaapana comes from the Hawaiian word kaʻāpana, meaning "distributor" or "part".
- imaging
- ai
- cloud-computing
- medical-imaging
Python package for image-based profiling
- cytominer
- microscopy
- morphological-profiling
- python
PAthological QUpath Obsession - QuPath and Python conversations
- digital-pathology
- qupath
- python
An NLP library for Uralic languages such as Finnish, Skolt Sami, Moksha and so on. Also supporting some non-Uralic languages such as Spanish, French, Arabic, Swedish, Norwegian, Russian and English. LLMs, FSTs and More!
- nlp-library
- uralic-languages
- finnish
- sami
RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
- biological-images
- root
- painter
- segmentation
Quanfima (Quantitative Analysis of Fibrous Materials)
- data-analysis
- material-science
- volumetric-data
- morphological-analysis
[DEPRECATED] A package for storing morphological profiling data.