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Eclipse SUMO is an open source, highly portable, microscopic and continuous traffic simulation package designed to handle large networks. It allows for intermodal simulation including pedestrians and comes with a large set of tools for scenario creation.
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Tools for computational pathology
Automated 3D cell detection in very large images
PyTorch Connectomics: segmentation toolbox for EM connectomics
A Python interface to access neuroanatomical atlases
Automated 3D brain registration with support for multiple species and atlases.
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.