Repository Index

A computer algebra system written in pure Python

• python
• math
• computer-algebra
• science

AlphaFold 3 inference pipeline.

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

• drug-discovery
• quantum-chemistry
• deep-learning
• biology

🔩 Like builtins, but boltons. 250+ constructs, recipes, and snippets which extend (and rely on nothing but) the Python standard library. Nothing like Michael Bolton.

• python
• utilities
• cache
• data-structures

Genetic Algorithm, Particle Swarm Optimization, Simulated Annealing, Ant Colony Optimization Algorithm,Immune Algorithm, Artificial Fish Swarm Algorithm, Differential Evolution and TSP(Traveling salesman)

• genetic-algorithm
• pso
• particle-swarm-optimization
• tsp

A hardware-agnostic SDK for optimization problems: define a problem once, then lower it to any quantum or classical solver

• constraint-programming
• quantum-computing
• quadratic-programming

Astronomy and astrophysics core library

• python
• astronomy
• science
• astrophysics

Official git repository for Biopython (originally converted from CVS)

• python
• bioinformatics
• genomics
• biopython

A PyTorch Library for Accelerating 3D Deep Learning Research

• pytorch
• 3d-deep-learning
• neural-networks
• differentiable-rendering

Silky smooth profiling for Django

• debug-toolbar
• debugging
• developer-tools
• django

MlFinLab helps portfolio managers and traders who want to leverage the power of machine learning by providing reproducible, interpretable, and easy to use tools.

• machine-learning
• trading
• investing
• research

3D visualization and mesh analysis for science and engineering

• vtk
• python
• visualization
• 3d

POT : Python Optimal Transport

• optimal-transport
• numerical-optimization
• machine-learning
• emd

A set of documented functions for simulating the performance of photovoltaic energy systems.

• solar-energy
• python
• renewable-energy
• renewables

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

• diffusion-models
• docking
• binding
• computational-biology

A research toolkit for particle swarm optimization in Python

• particle-swarm-optimization
• optimization-tools
• pso
• global-optimization

Python+Numpy+OpenGL: fast, scalable and beautiful scientific visualization

• python
• numpy
• opengl
• engine

Brian is a free, open source simulator for spiking neural networks.

• python
• neuroscience
• science
• differential-equations

Wallet UI simulation tool for BTC, ETH, SOL, XRP, and 200+ assets. Customize displayed balances in a controlled demo environment with persistent visual settings and screenshot-ready previews. Designed for testing, demonstrations, and UI prototyping without altering actual blockchain balances or transactions.

• bitcoin-transaction-tool
• browser-crypto-wallet
• crypto-broadcast-api
• electrum-payment

3D medical imaging reconstruction software

• dicom
• dicom-viewer
• magnetic-resonance-imaging
• medical-image-processing

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

• dna
• k-mer
• python
• bloom-filter

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

• kmer
• dnabert-model
• kmer-format
• gpu

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

• deep-learning
• protein-sequences
• protein-structure
• semi-supervised-learning