Open source code for AlphaFold 2.
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NumPy & SciPy for GPU
- cuda
- cudnn
- cublas
- cusolver
Theano was a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. It is being continued as PyTensor: www.github.com/pymc-devs/pytensor
AI Toolkit for Healthcare Imaging
- healthcare-imaging
- deep-learning
- medical-image-computing
- medical-image-processing
AlphaFold 3 inference pipeline.
TranslatedA knowledge graph for mathematics (primary school to high school), English (grade 3 to high school), and junior high school physics: 1,644 knowledge points, 2,403 prerequisite edges, and 6,723 questions, aligned with the curriculum standards, with an adaptive prerequisite diagnostic.
- chinese
- curriculum
- diagnostic
- edtech
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
- drug-discovery
- quantum-chemistry
- deep-learning
- biology
🔩 Like builtins, but boltons. 250+ constructs, recipes, and snippets which extend (and rely on nothing but) the Python standard library. Nothing like Michael Bolton.
- python
- utilities
- cache
- data-structures
Genetic Algorithm, Particle Swarm Optimization, Simulated Annealing, Ant Colony Optimization Algorithm,Immune Algorithm, Artificial Fish Swarm Algorithm, Differential Evolution and TSP(Traveling salesman)
- genetic-algorithm
- pso
- particle-swarm-optimization
- tsp
A Python based monitoring and tracking tool for Plex Media Server.
- plex
- plexpy
- python
- monitoring
Differentiable ODE solvers with full GPU support and O(1)-memory backpropagation.
Distributed Evolutionary Algorithms in Python
Physics Informed Deep Learning: Data-driven Solutions and Discovery of Nonlinear Partial Differential Equations
A hardware-agnostic SDK for optimization problems: define a problem once, then lower it to any quantum or classical solver
- constraint-programming
- quantum-computing
- quadratic-programming
A PyTorch Library for Accelerating 3D Deep Learning Research
- pytorch
- 3d-deep-learning
- neural-networks
- differentiable-rendering
A contact solver for physics-based simulations involving 👚 shells, 🪵 solids, 🪢 rods, 🧱 rigid bodies and ⏳ sand.
- cloth
- collision
- contact
- physics
Official repository for the Boltz biomolecular interaction models
- binding-prediction
- drug-discovery
- protein-structure
Eclipse SUMO is an open source, highly portable, microscopic and continuous traffic simulation package designed to handle large networks. It allows for intermodal simulation including pedestrians and comes with a large set of tools for scenario creation.
- traffic
- simulation
- transport
A Python toolbox for performing gradient-free optimization
Solving the Traveling Salesman Problem using Self-Organizing Maps
- self-organizing-map
- som
- tsp
- tsp-problem
MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
- python
- neuroscience
- electroencephalography
- magnetoencephalography
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
- pytorch
- protein-structure
- alphafold2
Tool for robust segmentation of >100 important anatomical structures in CT and MR images
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
- openworm
- elegans
- biology
- simulation