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Repository Index
47,133 repositories indexed
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Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 250,000+ scientists worldwide. 177 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.
- ai-scientist
- bioinformatics
- chemoinformatics
- claude
AKShare is an elegant and simple financial data interface library for Python, built for human beings! 开源财经数据接口库
- futures
- financial-data
- data-science
- quant
Official git repository for Biopython (originally converted from CVS)
- python
- bioinformatics
- genomics
- biopython
Eleven free Claude skills that test a business before you launch it: a board trained on Hormozi, Thiel and Jobs, a marketing director, a CFO, and a consumer panel of 100 buyer agents. Free, MIT.
- business-plan
- claude-code
- claude-skills
- startup
Deep probabilistic analysis of single-cell and spatial omics data
- scrna-seq
- variational-bayes
- variational-autoencoder
- cite-seq
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.
Kapowarr is a software to build and manage a comic book library, fitting in the *arr suite of software.
- comic
- comic-downloader
- comicbook
- comics
Cloud-native genomic dataframes and batch computing
- genetics
- vcf
- genomics
- gwas
Sharing Updatable Models (SUM) on Blockchain
- blockchain
- ml
- ai
- economics
Spatial Single Cell Analysis in Python
- single-cell-rna-seq
- single-cell-genomics
- spatial-transcriptomics
- spatial-analysis
Keep Whale-chan consistently vivid in every generation: High-consistency character design specification, visual asset library, and agent creation suite.
- claude-code
- codex
- comics
- gemini
Graph-linked unified embedding for single-cell multi-omics data integration
- bioinformatics
- deep-learning
- single-cell
- single-cell-multiomics
Cut AI context cost without trusting the compressor. Every reduction is reversible, byte-exact recoverable, and carries an auditable receipt. Local-first, works through proxy, MCP, SDK, or agent wrapper.
- ai-agents
- claude-code
- mcp
- token-optimization
Tools for computational pathology
- machine-learning
- digital-pathology
- computational-pathology
- biomedical-image-processing
A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
PyTorch Connectomics: segmentation toolbox for EM connectomics
- computer-vision
- neuroscience
- connectomics
- pytorch
MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in biomedical applications.
Read and write Neuroglancer datasets programmatically.
- neuroglancer
- volumetric-data
- python
- cloud
Solve nonlinear heterogeneous agent models
- economics
- economics-models
- nonlinear-dynamics
- hank
CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework
- ai4science
- llm
- multiagent-systems
- prompt-engineering
PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).
- deep-generative-model
- deep-learning
- single-cell-data-integration
- single-cell-multiomics
Autonomous multi-agent framework to optimize scientific software
- acceleration
- agentic-ai
- ai-agents
- bioinformatics
Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics