Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
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Simulation platform for general-purpose robotics & embodied AI learning.
Official git repository for Biopython (originally converted from CVS)
- python
- bioinformatics
- genomics
- biopython
Python framework for creating, editing, and running Noisy Intermediate-Scale Quantum (NISQ) circuits.
- nisq
- quantum-algorithms
- quantum-computing
- cirq
PennyLane is an open-source quantum software platform for quantum computing, quantum machine learning, and quantum chemistry. Create meaningful quantum algorithms, from inspiration to implementation.
Adaptive Experimentation Platform
PyWavelets - Wavelet Transforms in Python
- wavelets
- wavelet-transform
- signal-processing
- image-processing
QuTiP: Quantum Toolbox in Python
- qutip
- python
- quantum-toolbox
- quantum
ObsPy: A Python Toolbox for seismology/seismological observatories.
- seismology
- python
- observatories
- science
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.
An information security preparedness tool to do adversarial simulation.
- uber
- vagrant
- yaml
- celery
Cloud-native genomic dataframes and batch computing
- genetics
- vcf
- genomics
- gwas
Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models
- machine-learning
- generative-models
- drug-discovery
- benchmark
Pythonic tool for orchestrating machine-learning/high performance/quantum-computing workflows in heterogeneous compute environments.
- hpc
- workflow
- workflow-automation
- workflow-management
Plant phenotyping with image analysis
- science
- bioinformatics
- image-analysis
- plant-phenotyping
Python package for graph neural networks in chemistry and biology
- deep-learning
- graph-neural-networks
- dgl
- cheminformatics
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
- dna
- k-mer
- python
- bloom-filter
Interactive network visualization in Python and Dash, powered by Cytoscape.js
- plotly-dash
- plotly
- dash
- cytoscape
⚗ A package useful for chemistry written in Python
- chemistry
- physical-chemistry
- chemical-kinetics
- chemical-formulas
An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.
- itk
- insight-toolkit
- jupyter
- jupyter-widget
Molecular Processing Made Easy.
- python
- molecule
- rdkit
- drug-discovery
Graph-linked unified embedding for single-cell multi-omics data integration
- bioinformatics
- deep-learning
- single-cell
- single-cell-multiomics
A dependency-free cross-platform swiss army knife for PDB files.
- python
- protein
- pdb
- bioinformatics
This is a Pytorch implementation of the paper: Self-Supervised Graph Transformer on Large-Scale Molecular Data