Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
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Simulation platform for general-purpose robotics & embodied AI learning.
High-performance TensorFlow library for quantitative finance.
Official git repository for Biopython (originally converted from CVS)
- python
- bioinformatics
- genomics
- biopython
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
- python
- spack
- package-manager
- hpc
Python framework for creating, editing, and running Noisy Intermediate-Scale Quantum (NISQ) circuits.
- nisq
- quantum-algorithms
- quantum-computing
- cirq
PennyLane is an open-source quantum software platform for quantum computing, quantum machine learning, and quantum chemistry. Create meaningful quantum algorithms, from inspiration to implementation.
Accelerated deep learning R&D
:spider_web: input/output for many mesh formats
- vtk
- pypi
- python
- mesh
Open-source, end-to-end platform for evaluating, observing, and improving LLM and AI agent applications. Tracing · Evals · Simulations · Datasets · Gateway · Guardrails. Self-hostable. Apache 2.0.
- ai-gateway
- observability
- simulation
- ai-agents
Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining
QuTiP: Quantum Toolbox in Python
- qutip
- python
- quantum-toolbox
- quantum
A full spaCy pipeline and models for scientific/biomedical documents.
- scientific-documents
- spacy
- custom-pipes
- nlp
ObsPy: A Python Toolbox for seismology/seismological observatories.
- seismology
- python
- observatories
- science
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.
An information security preparedness tool to do adversarial simulation.
- uber
- vagrant
- yaml
- celery
Cloud-native genomic dataframes and batch computing
- genetics
- vcf
- genomics
- gwas
Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models
- machine-learning
- generative-models
- drug-discovery
- benchmark
Pythonic tool for orchestrating machine-learning/high performance/quantum-computing workflows in heterogeneous compute environments.
- hpc
- workflow
- workflow-automation
- workflow-management
Plant phenotyping with image analysis
- science
- bioinformatics
- image-analysis
- plant-phenotyping
Python package for graph neural networks in chemistry and biology
- deep-learning
- graph-neural-networks
- dgl
- cheminformatics
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
- dna
- k-mer
- python
- bloom-filter
Interactive network visualization in Python and Dash, powered by Cytoscape.js
- plotly-dash
- plotly
- dash
- cytoscape
⚗ A package useful for chemistry written in Python
- chemistry
- physical-chemistry
- chemical-kinetics
- chemical-formulas