Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
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Simulation platform for general-purpose robotics & embodied AI learning.
SciPy library main repository
- python
- scipy
- algorithms
- closember
Official git repository for Biopython (originally converted from CVS)
- python
- bioinformatics
- genomics
- biopython
Official repository for the Boltz biomolecular interaction models
- binding-prediction
- drug-discovery
- protein-structure
Eclipse SUMO is an open source, highly portable, microscopic and continuous traffic simulation package designed to handle large networks. It allows for intermodal simulation including pedestrians and comes with a large set of tools for scenario creation.
- traffic
- simulation
- transport
Code for running RFdiffusion
This package contains deep learning models and related scripts for RoseTTAFold
Brian is a free, open source simulator for spiking neural networks.
- python
- neuroscience
- science
- differential-equations
Math & CS awesome List, distinguished by proof and logic technique
An information security preparedness tool to do adversarial simulation.
- uber
- vagrant
- yaml
- celery
Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models
- machine-learning
- generative-models
- drug-discovery
- benchmark
Pythonic tool for orchestrating machine-learning/high performance/quantum-computing workflows in heterogeneous compute environments.
- hpc
- workflow
- workflow-automation
- workflow-management
OpenMDAO repository.
- nasa
- open-source
- framework
- openmdao
A Python package to visualise neuroanatomical data in atlas space
- neuroscience
- python
- anatomy
- visualization
Interactive network visualization in Python and Dash, powered by Cytoscape.js
- plotly-dash
- plotly
- dash
- cytoscape
Universal SKILL.md catalog for research workflows: literature review, research design, project memory, manuscript writing, and cross-agent delegation for Claude Code, Codex, Gemini, Cursor, OpenClaw, and generic AI clients.
- academic-writing
- ai-skills
- notebooklm
- obsidian
Main yt repository
- data
- visualization
- analysis
- python
Generative biopolymer design with rich conditioning.
The repository host gives no description.
cell detection in calcium imaging recordings
- imaging
- neuroscience
- data-analysis
Tools for computational pathology
- machine-learning
- digital-pathology
- computational-pathology
- biomedical-image-processing
Unmanned Surface Vehicle simulation on Gazebo with water current and winds
- usv
- boat
- gazebo
- water-surface
A dependency-free cross-platform swiss army knife for PDB files.
- python
- protein
- pdb
- bioinformatics