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Numenta Platform for Intelligent Computing is an implementation of Hierarchical Temporal Memory (HTM), a theory of intelligence based strictly on the neuroscience of the neocortex.
Eclipse SUMO is an open source, highly portable, microscopic and continuous traffic simulation package designed to handle large networks. It allows for intermodal simulation including pedestrians and comes with a large set of tools for scenario creation.
Modern, privacy-friendly, and detailed web analytics that works without cookies or JS.
A basic user tool to execute simple docker containers in batch or interactive systems without root privileges.
A virtual host scanner that performs reverse lookups, can be used with pivot tools, detect catch-all scenarios, work around wildcards, aliases and dynamic default pages.
Brian is a free, open source simulator for spiking neural networks.
Native Pokémon Emerald port for Nintendo 3DS, featuring dual-screen gameplay, stereoscopic 3D, and a fully 3D world.
A Python package to visualise neuroanatomical data in atlas space
Interactive network visualization in Python and Dash, powered by Cytoscape.js
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
cell detection in calcium imaging recordings
Tools for computational pathology
CellViT: Vision Transformers for Precise Cell Segmentation and Classification
Image restoration for fluorescence microscopy
Python's missing "algorave" module. Live code music with Python using MIDI, OSC and/or SuperCollider.
A Cytoscape Jupyter widget
Automated 3D cell detection in very large images
Deep and Machine Learning for Microscopy
A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
PyTorch Connectomics: segmentation toolbox for EM connectomics
A Python interface to access neuroanatomical atlases
Non-comprehensive list of projects and resources related to open microscopy.
Read and write Neuroglancer datasets programmatically.
Automated 3D brain registration with support for multiple species and atlases.