A Python package to visualise neuroanatomical data in atlas space
- neuroscience
- python
- anatomy
- visualization
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Automated 3D cell detection in very large images
- microscopy
- cell-detection
- deep-learning
- image-analysis
Automated 3D brain registration with support for multiple species and atlases.
- registration
- atlases
- brain
- neuroscience
A dataset of 2D imagery, 3D point cloud data, and 3D vehicle bounding box labels all generated using the Grand Theft Auto 5 game engine.
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
- biology
- fluorescence
- image-analysis
- image-processing
Gaussian processes and Bayesian optimization for images and hyperspectral data
- image-processing
- hyperspectral-images
- gaussian-processes
- bayesian-optimization
Lattice light-sheet post-processing utility.
- microscopy
- light-sheet
- image-processing
- image-analysis
An interactive image processing program for biologists written in Python.
- biologists
- python
- imagej
- calcium
Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
- microscopy
- image-processing
- segmentation
- biology
A python package to analyze the matrix fiber orientation and intensity around cells in fiber matrices (as a proxy for cellular forces).
- imaging
- microscopy
- contractility
- collagen
Panoptic segmentation algorithms for 2D and 3D electron microscopy images
- deep-learning
- semantic-segmentation
- segmentation
- pytorch