AlphaFold 3 inference pipeline.
Repository Index
47,133 repositories indexed
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A PyTorch Library for Accelerating 3D Deep Learning Research
- pytorch
- 3d-deep-learning
- neural-networks
- differentiable-rendering
Python framework for creating, editing, and running Noisy Intermediate-Scale Quantum (NISQ) circuits.
- nisq
- quantum-algorithms
- quantum-computing
- cirq
Eclipse SUMO is an open source, highly portable, microscopic and continuous traffic simulation package designed to handle large networks. It allows for intermodal simulation including pedestrians and comes with a large set of tools for scenario creation.
- traffic
- simulation
- transport
PennyLane is an open-source quantum software platform for quantum computing, quantum machine learning, and quantum chemistry. Create meaningful quantum algorithms, from inspiration to implementation.
POT : Python Optimal Transport
- optimal-transport
- numerical-optimization
- machine-learning
- emd
Brian is a free, open source simulator for spiking neural networks.
- python
- neuroscience
- science
- differential-equations
WeeWX code repository
- weather
- python
- weewx
- raspberry-pi
:spider_web: Gmsh for Python
- python
- pypi
- mesh-generation
- engineering
Pythonic tool for orchestrating machine-learning/high performance/quantum-computing workflows in heterogeneous compute environments.
- hpc
- workflow
- workflow-automation
- workflow-management
Plant phenotyping with image analysis
- science
- bioinformatics
- image-analysis
- plant-phenotyping
zoofs is a python library for performing feature selection using a variety of nature-inspired wrapper algorithms. The algorithms range from swarm-intelligence to physics-based to Evolutionary. It's easy to use , flexible and powerful tool to reduce your feature size.
- machine-learning
- python
- evolutionary-algorithms
- genetic-algorithm
A Python interface to access neuroanatomical atlases
- neuroscience
- python
- microscopy
- registration
The World's Most Comprehensive, Authoritative, and Structured Open Source Data Source Knowledge Base
- mcp
- data-sources
- ai
- awesome-list
TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524
- self-attention
- compound-protein-interaction
- transformercpi
- structure-free-virtual-sreening
:dart: Accurate sums and dot products for Python.
- mathematics
- numerical-methods
- engineering
- accuracy
NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions
- computational-biology
- bioinformatics
- graph-convolution
- deep-learning
💬 Trace citation chains for any concept across research papers and render them as an interactive graph.
- academic-research
- bibliography
- citation-graph
- cli
Python Frontend to Algorithms of the Algorithm Engineering Group Heidelberg
- combinatorial-optimization
- community-detection
- dynamic-graphs
- edge-orientation
Nova DSO Tracker is an open-source Flask application for astrophotographers, providing real-time tracking of deep-sky objects' altitude, observability prediction, and integration with Stellarium and SIMBAD databases.
Open-source simulation harness for testing AI agents. Simulate LLM and tool calls to test edge cases, failure paths, and agent logic without live API calls.
- ai-agents
- ai-testing
- llm
- llm-evaluation
Simple, modern ETH backtesting project using Pandas/Numpy: data prep, MA signals, portfolio simulation, and result visualization.
- algorithmic-trading
- cryptocurrency
- ethereum
- moving-average
Vendor-agnostic, FHIR-Genomics-aligned API contract for cross-vendor NGS interpretation. JSON Schema + TypeScript + Python pydantic.