Tools for computational pathology
Repository Index
47,133 repositories indexed
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PyTorch Connectomics: segmentation toolbox for EM connectomics
Read and write Neuroglancer datasets programmatically.
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
Gaussian processes and Bayesian optimization for images and hyperspectral data
Lattice light-sheet post-processing utility.
An interactive image processing program for biologists written in Python.
Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
A python package to analyze the matrix fiber orientation and intensity around cells in fiber matrices (as a proxy for cellular forces).