Open source code for AlphaFold 2.
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AlphaFold 3 inference pipeline.
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
- drug-discovery
- quantum-chemistry
- deep-learning
- biology
Official git repository for Biopython (originally converted from CVS)
- python
- bioinformatics
- genomics
- biopython
Official repository for the Boltz biomolecular interaction models
- binding-prediction
- drug-discovery
- protein-structure
Biomni: a general-purpose biomedical AI agent
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
- tensorflow
- deep-neural-network
- genomics
- science
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
- pytorch
- protein-structure
- alphafold2
Code for running RFdiffusion
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
- openworm
- elegans
- biology
- simulation
Single-cell analysis in Python. Scales to >100M cells.
- machine-learning
- data-science
- visualize-data
- transcriptomics
Reverse engineering SARS-CoV-2
- covid-19
NeuroKit2: The Python Toolbox for Neurophysiological Signal Processing
- python
- ecg
- eda
- emg
This package contains deep learning models and related scripts for RoseTTAFold
This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.
Toward High-Accuracy Open-Source Biomolecular Structure Prediction.
- ai4science
- research
Chai-1, SOTA model for biomolecular structure prediction
Data intensive science for everyone.
Deep probabilistic analysis of single-cell and spatial omics data
- scrna-seq
- variational-bayes
- variational-autoencoder
- cite-seq
Biological foundation modeling from molecular to genome scale
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.
- ai-agents
- bioinformatics
- equity
- genomics
An open-source application for biological image analysis
Cloud-native genomic dataframes and batch computing
- genetics
- vcf
- genomics
- gwas
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis