47,133 repositories indexed
1–24 of 25 · Most stars
Eclipse SUMO is an open source, highly portable, microscopic and continuous traffic simulation package designed to handle large networks. It allows for intermodal simulation including pedestrians and comes with a large set of tools for scenario creation.
Code for running RFdiffusion
This package contains deep learning models and related scripts for RoseTTAFold
Brian is a free, open source simulator for spiking neural networks.
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
Generation of protein sequences and evolutionary alignments via discrete diffusion models
Universal SKILL.md catalog for research workflows: literature review, research design, project memory, manuscript writing, and cross-agent delegation for Claude Code, Codex, Gemini, Cursor, OpenClaw, and generic AI clients.
Generative biopolymer design with rich conditioning.
The repository host gives no description.
cell detection in calcium imaging recordings
Tools for computational pathology
Unmanned Surface Vehicle simulation on Gazebo with water current and winds
A dependency-free cross-platform swiss army knife for PDB files.
OpenAeroStruct is a lightweight tool that performs aerostructural optimization using OpenMDAO.
Automated 3D cell detection in very large images
PyTorch Connectomics: segmentation toolbox for EM connectomics
A Python interface to access neuroanatomical atlases
Automated 3D brain registration with support for multiple species and atlases.
Inner ear models for Python
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
💬 Trace citation chains for any concept across research papers and render them as an interactive graph.
Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance
Local CrossRef database with 167M+ works and full-text search