A very simple framework for state-of-the-art Natural Language Processing (NLP)
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Official git repository for Biopython (originally converted from CVS)
- python
- bioinformatics
- genomics
- biopython
📐 Compute distance between sequences. 30+ algorithms, pure python implementation, common interface, optional external libs usage.
- distance
- algorithm
- python
- textdistance
"Security Incidents In A Box!" A modular, menu-driven, cross-platform tool for building customized, time-delayed, distributed security events. Easily create custom event chains for Blue- & Red Team drills and sensor / alert mapping. Red Teams can create decoy incidents, distractions, and lures to support and scale their operations. Build event sequences ("narratives") to simulate realistic scenarios and generate corresponding network and filesystem artifacts.
Innovation-first digital audio workstation (DAW), instrument and effect plugins, wave editor
- daw
- sequencer
- digital-audio-workstation
- songs
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
- dna
- k-mer
- python
- bloom-filter
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
- kmer
- dnabert-model
- kmer-format
- gpu
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
- deep-learning
- protein-sequences
- protein-structure
- semi-supervised-learning
Sequence learning toolkit for Python
Generation of protein sequences and evolutionary alignments via discrete diffusion models
- discrete-diffusion
- generative-model
- multiple-sequence-alignment
- protein-sequences
Python's missing "algorave" module. Live code music with Python using MIDI, OSC and/or SuperCollider.
- algorave
- algorithmic-music
- audio
- improvisation
Bi-Directional Equivariant Long-Range DNA Sequence Modeling
TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524
- self-attention
- compound-protein-interaction
- transformercpi
- structure-free-virtual-sreening
Graph to sequence implemented in Pytorch combining Graph convolutional networks and opennmt-py
code to run sei and obtain sei and sequence class predictions
Reference-preserving sprite animation skill for AI agents: intact-limb walks, small jumps, transparent PNG sequences and GIF.
- codex-skill
- pixel-art
- python
- sprite-animation
Code to download, process, and analyse the Online Encyclopedia of Integer Sequences
MicroPython Stepper Motor Sequence Control