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Mesa is an open-source Python library for agent-based modeling, ideal for simulating complex systems and exploring emergent behaviors.

  • mesa
  • agent-based-modeling
  • agent-based-simulation
  • simulation-framework

A Python package for interactive mapping and geospatial analysis with minimal coding in a Jupyter environment

  • ipyleaflet
  • folium
  • mapping
  • python

Transform geospatial relations into graphs for Graph Neural Networks and spatial network analysis

  • network-analysis
  • spatial-analysis
  • geographical-information-system
  • graph-neural-networks

Deep probabilistic analysis of single-cell and spatial omics data

  • scrna-seq
  • variational-bayes
  • variational-autoencoder
  • cite-seq

Spatial Single Cell Analysis in Python

  • single-cell-rna-seq
  • single-cell-genomics
  • spatial-transcriptomics
  • spatial-analysis

Open Reality: phone video to AI-queryable 3D scenes. MCP tools for Claude/Codex/Cursor (npm openreality-mcp), the self-hostable broker, and the VGGT-SLAM library, in one repo. BSD-2-Clause.