Repository Index

Mesa is an open-source Python library for agent-based modeling, ideal for simulating complex systems and exploring emergent behaviors.

• mesa
• agent-based-modeling
• agent-based-simulation
• simulation-framework

Cartopy - a cartographic python library with matplotlib support

• cartopy
• matplotlib
• python
• geometry

Tools for computational pathology

• machine-learning
• digital-pathology
• computational-pathology
• biomedical-image-processing

Autonomous multi-agent framework to optimize scientific software

• acceleration
• agentic-ai
• ai-agents
• bioinformatics

🗺️ List of GeoJSON invalid geometry issues with example files

• geometry
• gis
• validation
• vector

MCP server for spatial transcriptomics analysis through natural language interfaces.

• bioinformatics
• cell-communication
• deconvolution
• machine-learning

Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics

• bioinformatics
• cell-type-deconvolution
• computational-biology
• deconvolution