Python & Command-line tool to gather text and metadata on the Web: Crawling, scraping, extraction, output as CSV, JSON, HTML, MD, TXT, XML
- web-scraping
- text-extraction
- nlp
- html2text
Repository Index
47,133 repositories indexed
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Official git repository for Biopython (originally converted from CVS)
- python
- bioinformatics
- genomics
- biopython
Official repository for the Boltz biomolecular interaction models
- binding-prediction
- drug-discovery
- protein-structure
📐 Compute distance between sequences. 30+ algorithms, pure python implementation, common interface, optional external libs usage.
- distance
- algorithm
- python
- textdistance
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
- pytorch
- protein-structure
- alphafold2
POT : Python Optimal Transport
- optimal-transport
- numerical-optimization
- machine-learning
- emd
Open-source AI video replacement workflow by TEIN. Combine depth maps, SAM segmentation, face meshes, and audio processing to replace characters and objects with Seedance. Includes a local web UI to prepare inputs, review masks, preview generations, and export with original audio.
The open-source governance layer for AI agents: write the rules declaratively, Bernstein enforces them and produces the verifiable, replayable record. Free, Apache-2.0. https://bernstein.run
- agent-orchestrator
- deterministic-replay
- air-gap
- audit-trail
Flexible audio loudness meter in Python with implementation of ITU-R BS.1770-4 loudness algorithm
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
- deep-learning
- protein-sequences
- protein-structure
- semi-supervised-learning
Official release of the ProGen models
- language-model
- protein
- generative-model
Generation of protein sequences and evolutionary alignments via discrete diffusion models
- discrete-diffusion
- generative-model
- multiple-sequence-alignment
- protein-sequences
OmegaFold Release Code
A Python Package for Protein Dynamics Analysis
- python
- protein
- dynamics
Generative biopolymer design with rich conditioning.
A tool for semi-automatic cell type classification
- python
- single-cell
- machine-learning
- scrna-seq
A dependency-free cross-platform swiss army knife for PDB files.
- python
- protein
- pdb
- bioinformatics
Source code for "DeepDTA: deep drug-target binding affinity prediction"
- protein-ligand-interactions
- convolutional-neural-networks
Ankh: Optimized Protein Language Model
LLM for Drug Editing, ICLR 2024
- chatgpt
- conversation
- drug
- drug-discovery
TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524
- self-attention
- compound-protein-interaction
- transformercpi
- structure-free-virtual-sreening
dojo and django - the perfect couple
A package that adds new panels for selecting colors, works both on regular page fields and stream field.
- wagtail
- input-color
AI crypto trading bot with deep neural network (84.9% accuracy, 25 coins). BiLSTM + Attention trained on GPU. Bybit, Binance, OKX, Gate.io. Free cloud or self-hosted.