Plant phenotyping with image analysis
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An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.
Spatial Single Cell Analysis in Python
Tools for computational pathology
Image quality is an open source software library for Image Quality Assessment (IQA).
Automated 3D cell detection in very large images
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
Python package for image-based profiling
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings together the most popular image processing packages from across the python universe, meaning no more looking at documentation! HistoClean provides real time feedback to augmentations and preprocessing options. This allows users to evaluate their steps before implementation.
Lattice light-sheet post-processing utility.