Repository Index

R toolkit for single cell genomics

• human-cell-atlas
• single-cell-rna-seq
• single-cell-genomics
• cran

Fast, sensitive and accurate integration of single-cell data with Harmony

• scrna-seq
• algorithm
• data-integration
• r

R package for detecting doublets in single-cell RNA sequencing data

Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome

• cancer-genomics
• cnv-detection
• single-cell
• phylogeny

talk with NCBI entrez using R

• r
• rstats
• r-package

A gallery of animations in statistics and utilities to create animations

• r
• r-package
• animation
• statistics

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

• r
• neuroanatomy-toolbox
• cran
• neuron

Methods for Image-Based Cell Profiling

• profiling
• microscopy
• r

chemmodlab: A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models

Accelerated similarity searching of small molecules (bioconductor package)

Functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats.

• nifti
• afni
• analyze