Repository Index

Fast, sensitive and accurate integration of single-cell data with Harmony

• scrna-seq
• algorithm
• data-integration
• r

Multi-Omics Factor Analysis

• multi-omics
• factor-analysis
• mofa

Code and data used to create the examples in "Evidence-based Software Engineering based on the publicly available data"

• cognitive-capitalism
• cognitive-science
• economic-models
• ecosystem-modeling

Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome

• cancer-genomics
• cnv-detection
• single-cell
• phylogeny

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

• r
• neuroanatomy-toolbox
• cran
• neuron

Methods for Image-Based Cell Profiling

• profiling
• microscopy
• r