Repository Index

R toolkit for single cell genomics

• human-cell-atlas
• single-cell-rna-seq
• single-cell-genomics
• cran

Fast, sensitive and accurate integration of single-cell data with Harmony

• scrna-seq
• algorithm
• data-integration
• r

R package for detecting doublets in single-cell RNA sequencing data

Multi-Omics Factor Analysis

• multi-omics
• factor-analysis
• mofa

Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome

• cancer-genomics
• cnv-detection
• single-cell
• phylogeny

talk with NCBI entrez using R

• r
• rstats
• r-package

Umbrella package of the 'spatstat' family................

• r
• spatial-analysis
• spatial-data
• spatstat

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

• r
• neuroanatomy-toolbox
• cran
• neuron

chemmodlab: A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models

Accelerated similarity searching of small molecules (bioconductor package)