A tool for cell instance aware segmentation in densely packed 3D volumetric images
- segmentation
- deep-learning
- bioinformatics
- neural-network
Repository Index
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ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
- neuroimaging
- reproducibility
- pipeline
- meta-analysis
A strongly-typed genetic programming framework for Python
- python
- ipynb
- genetic-programming
- framework
Integrated pipeline for multiplexed image analysis
- multiplexed-imaging
- python
:spider_web: Compute interesting points, areas, and volumes in simplex meshes of any dimension.
- mathematics
- python
- pypi
- voronoi-diagram
Accelerated tensor operations and dynamic neural networks based on reverse mode automatic differentiation for every device that can run Swift - from watchOS to Linux
- deep-learning
- deep-neural-networks
- gradient-descent
- automatic-differentiation
A .NET library that provides fast, accurate and automatic differentiation (computes derivative / gradient) of mathematical functions.
- mathematical-modelling
- automatic-differentiation
- mathematics
- math
TranslatedAntifouling coating evidence panel: formulation sandbox, route biofouling stress, literature bounds. Simulation ≠ measurement. Live: https://simulator.jassyhong.top
- biofouling
- formulation
- antifouling
- evidence-panel
A handy calculator, based on Rust and WebAssembly.
- webassembly
- calculator
- math
- rust
🔟 Implementation of rational number arithmetic for .NET with arbitrary precision.
- arbitrary-precision
- biginteger
- bigrational
- c-sharp
Toolbox for the analysis of smFISH images.
- pattern-classification
- rna-localization
- segmentation
- smfish
python functions for simulating optical transfer functions
- microscopy
- numpy
slick is a simple to use polygon collision library inspired by bump.lua
The Massively Parallel Quantum Chemistry program, MPQC, computes properties of atoms and molecules from first principles using the time independent Schrödinger equation.
Variations on Kirby & Paris' hydra battles and other entertaining math in Coq (collaborative, documented, includes exercises) [maintainer=@Casteran]
- coq
- hydra-battles
- ordinal-notations
- formal-proofs
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
- r
- neuroanatomy-toolbox
- cran
- neuron
A simple, lightweight spatial hash for Lua
PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).
- deep-generative-model
- deep-learning
- single-cell-data-integration
- single-cell-multiomics
MAT is library for working with multi-dimensional arrays which supports efficient interfacing to foreign and CUDA code. BLAS and CUBLAS bindings are available.
Research experiments exploring uncommon quant techniques.
- analysis
- jupyter-notebook
- python
- quant
A set of protocols for Arithmetic, Statistics and Logical operations
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
- cell-annotation
- multiplexed-imaging
- mpif
A simple ffi-accelerated vector library for everyone
The framework for quantification of neuronal anatomy
- neuroscience
- neuroanatomy-toolbox
- imagej
- imagej2