Python package for image-based profiling
- cytominer
- microscopy
- morphological-profiling
- python
Repository Index
47,133 repositories indexed
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A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
- protein
- protein-sequences
- protein-design
- representation-learning
The repository host gives no description.
The repository host gives no description.
Easy link prediction tool
- python
- network-analysis
- link-prediction
- research
A tool for cell instance aware segmentation in densely packed 3D volumetric images
- segmentation
- deep-learning
- bioinformatics
- neural-network
Auto-QChem is an automated workflow for the generation and storage of DFT calculations for organic molecules.
- cheminformatics
- dft-calculations
- automation
- feature
Swift library like numpy, playgrounds notebook like jupyter.
- swift
- matrix
- linearalgebra
- playgrounds
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
- neuroimaging
- reproducibility
- pipeline
- meta-analysis
Inner ear models for Python
- python
- cochlea
- inner-ear
- model
Axon/Myelin segmentation using Deep Learning
- deep-learning
- machine-learning
- myelin
- axon
GeneCompass
A strongly-typed genetic programming framework for Python
- python
- ipynb
- genetic-programming
- framework
Learning cell communication from spatial graphs of cells
- tensorflow
- gnn
- glm
- cvae
code to run sei and obtain sei and sequence class predictions
Integrated pipeline for multiplexed image analysis
- multiplexed-imaging
- python
:spider_web: Compute interesting points, areas, and volumes in simplex meshes of any dimension.
- mathematics
- python
- pypi
- voronoi-diagram
CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework
- ai4science
- llm
- multiagent-systems
- prompt-engineering
Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
:dart: Accurate sums and dot products for Python.
- mathematics
- numerical-methods
- engineering
- accuracy
Detecting cancers on mobile phones
PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturbations at bulk and single-cell levels.
Toolbox for the analysis of smFISH images.
- pattern-classification
- rna-localization
- segmentation
- smfish
TypeDB Bio: Biomedical Knowledge Graph
- bioinformatics
- knowledge-graph
- knowledge-base
- drug-discovery