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Native R and Python sample-deletion robustness for omics: candidate certificates, minimum deletion bounds, Bioconductor model refits and donor-level pseudobulk
- bioinformatics
- exact-optimization
- metabolomics
- paired-data
CVE-2026-109618 / CVE-2026-109619 pre-auth RCE in PHP session.upload_progress (mod_php): version-aware exploit profiles, Docker labs, heap calibration and detection guidance.
- cve-2026-109618
- cve-2026-109619
- exploit
- mod-php
TOMC Memory: CPU context compression and task memory for Codex, Claude Code, Cursor, TRAE, WorkBuddy and other MCP clients.
- agent-memory
- claude-code
- codex
- context-compression
Quantitative Research Handbook
Awesome list of software that I use to do research in medical imaging.
Overleaf CLI - pull, push, sync, compile LaTeX projects from your terminal. Git remote helper, MCP server for AI agents, and TypeScript library.
Evidence archive for Jesus of Nazareth: research dossier (PDF), New Testament, gnostic and extracanonical gospels, church fathers, ancient witnesses, Roman legal documents, archaeology, and all 238 cited references — searchable reader at https://sybil-solutions.github.io/all-historical-evidence-of-jesus-christ/
CaseCite is an open-source, self-hosted legal RAG caselaw research & document analysis platform.
- legal
- legal-ai
- legal-tech
- legaltech
Open Source Community for AI Researchers
PDF typesetting tool for Markdown files
An autonomous agent that profiles, optimizes, and validates AI training code.
ShowStopper is a tool for helping malware researchers explore and test anti-debug techniques or verify debugger plugins or other solutions that clash with standard anti-debug methods.
How many bugs can LMs find & fix in large codebases?
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
- omero
- java
- python
- server
TranslatedMedical paper writing and research assistant: 32 Agent Skills for Chinese physicians and medical graduate students, usable with Claude Code and Codex, covering topic selection, PubMed literature search, Chinese and English writing, journal selection and submission, and peer review and revision. Medical writing & research skills.
- academic-writing
- agent-skills
- ai-agents
- biostatistics
The harness of Open Math OS, infrastructure for Math 2.0. Built for everyday math research.
BINNY: an open source agent harness for reverse engineering. Plug in any model, or a local one.
- ghidra
- llm-agent
- malware-analysis
- ollama
This is the official repo for paper InteractiveWorld A Verifiable Human-Centric Environment for Building Better Interactive MLLM Assistants
A user friendly way to search OpenStreetMap data for features in proximity to each other.
- gui
- javascript
- open-source-research
- open-street-map
TranslatedLet your AI deliver more value | ChatGPT project context integration, multi-model collaboration and cross-review across Codex / Claude Code and APIs, with unified account quota and session management
Translated研迹 Trail (Yanji, "research trail"): a local-first AI investment research workbench. Connects market quotes, candlestick charts, and deep research, so that judgments are traceable and risks can be reviewed. Local-first AI investment research desktop with an evidence-grounded copilot.
- ai-agent
- electron
- financial-analysis
- local-first
A SDK for the creation of analysis tools without obtaining app source code in order to profile runtime performance, examine code coverage, and track high-risk behaviors of a given app on Android 5.0 and above.
- binary-instrument
- android
- malware-research
- reverse-engineering
A Hub/research area, for jailbreaking LLM's, and breaking their safety filters.