talk with NCBI entrez using R
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TranslatedAcademic research library for DSH — search, cite, approve imports, hand off notes. Also: a research literature library plugin for DeepSeek Harness: search papers, include sources, approve imports into the library, and hand off note leads to other plugins in the same session.
- academic
- agentero
- ai-agents
- citations
A formalization of geometry in Coq based on Tarski's axiom system
Umbrella package of the 'spatstat' family................
- r
- spatial-analysis
- spatial-data
- spatstat
A gallery of animations in statistics and utilities to create animations
- r
- r-package
- animation
- statistics
A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
Free (GPL) Common Lisp data analysis library with emphasis on modularity and conceptual clarity.
Medical LLM agent and MRI segmentation workspace built on PharmaLLM, with LangGraph, vLLM, and BEU-Net.
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
- cancer-imaging-research
- radiomics
- radiomics-features
- machine-learning
Probabilistic cell segmentation for in situ spatial transcriptomics
A general library for geometry operations of union, intersections, difference, and xor
- computational-geometry
- union
- intersection
- xor
A command-line utility for quick math.
Practical volume computation and sampling in high dimensions
- geometry
- statistics
- polyhedral-computations
- random-walk
Code that makes the Iowa Environmental Mesonet run, or run into the ground.
- weather
- mesonet
- iowa
The RAW JavaScript Quaternion library
- quaternion
- angle
- conjugate
- math
A collection of useful mathematical functions in Elixir with a slant towards statistics, linear algebra and machine learning
Wrapper for RDKit's RunReactants to improve stereochemistry handling
A Network Integration Approach for Drug-Target Interaction Prediction
A Python package for molecular docking with an extensive, highly-curated dataset and a set of realistic benchmark tasks for drug discovery.
scPerturb: A resource and a python/R tool for single-cell perturbation data
- cite-seq
- database
- perturbation
- scatac-seq
MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in biomedical applications.
Molecule Validation and Standardization
- rdkit
- python
- chemistry
- cheminformatics
Open source tumor evidence matching for sequencing labs and hospitals without molecular tumor boards. Research prototype; oncologist review required.
- bioinformatics
- cancer-research
- computational-biology
- drug-repurposing
The implementation code for "DAGAN: Deep De-Aliasing Generative Adversarial Networks for Fast Compressed Sensing MRI Reconstruction"
- generative-adversarial-network
- mri-reconstruction
- computer-vision
- deep-learning