Repository Index

OFF, Open source Finite volume Fluid dynamics code

• fluid-dynamics
• fortran
• oop
• cfd

Chemical 2D structure editor application/applet based on the Chemistry Development Kit

• blueobelisk
• java
• chemistry

FastGenericNew: high-performance generic instantiation for .NET, replacing Activator.CreateInstance<

• activator
• createinstance
• csharp
• csharp-library

Type-safe dependency injection singleton wrapper with lazy init and generic constructor support

• activator
• dependency-injection
• instantiation
• lazy-loading

Accurate and efficient spot detection for microscopy data

⚡ Open-source software for deep learning-based digital pathology

• deep-learning
• machine-learning
• digital-pathology
• computational-pathology

A library of mechanised undecidability proofs in the Coq proof assistant.

• coq

A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design

• protein
• protein-sequences
• protein-design
• representation-learning

RTree2D is a 2D immutable R-tree for ultra-fast nearest and intersection queries in plane and spherical coordinates

• scala
• rtree
• 2d
• str

Easy link prediction tool

• python
• network-analysis
• link-prediction
• research

A tool for cell instance aware segmentation in densely packed 3D volumetric images

• segmentation
• deep-learning
• bioinformatics
• neural-network

Inner ear models for Python

• python
• cochlea
• inner-ear
• model

Axon/Myelin segmentation using Deep Learning

• deep-learning
• machine-learning
• myelin
• axon

Learning cell communication from spatial graphs of cells

• tensorflow
• gnn
• glm
• cvae

code to run sei and obtain sei and sequence class predictions

Extensive math expression evaluator library for JavaScript and Node.js

• typescript
• interpreter
• javascript
• calculator

Delphi matrix library

Delaunay triangulation for convex polygon

:spider_web: Compute interesting points, areas, and volumes in simplex meshes of any dimension.

• mathematics
• python
• pypi
• voronoi-diagram

A Swift port of the Cassowary linear constraint solver

• cassowary
• constraint-solver
• swift

Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.

Structural variant detection and association testing

Accelerated tensor operations and dynamic neural networks based on reverse mode automatic differentiation for every device that can run Swift - from watchOS to Linux

• deep-learning
• deep-neural-networks
• gradient-descent
• automatic-differentiation

hsolve：电磁仿真大规模非正定厄密特征值求解。Certified shift-invert eigensolver for large sparse Hermitian (indefinite, generalized) eigenproblems from EM simulation: MUMPS LDLᵀ + block Krylov-Schur + Sylvester-inertia completeness certificate.

• computational-electromagnetics
• cpp17
• eigensolver
• eigenvalues