⚡ Open-source software for deep learning-based digital pathology
- deep-learning
- machine-learning
- digital-pathology
- computational-pathology
Repository Index
89,073 visible repositories in the index
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Python package for image-based profiling
- cytominer
- microscopy
- morphological-profiling
- python
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
- protein
- protein-sequences
- protein-design
- representation-learning
Easy link prediction tool
- python
- network-analysis
- link-prediction
- research
A tool for cell instance aware segmentation in densely packed 3D volumetric images
- segmentation
- deep-learning
- bioinformatics
- neural-network
The RAW JavaScript library to work with polynomials
- polynomials
- math
- javascript
Auto-QChem is an automated workflow for the generation and storage of DFT calculations for organic molecules.
- cheminformatics
- dft-calculations
- automation
- feature
Axon/Myelin segmentation using Deep Learning
- deep-learning
- machine-learning
- myelin
- axon
Clipping and geometric operations for spherical polygons.
- d3
- map
- polygon-clipping
- projection
A strongly-typed genetic programming framework for Python
- python
- ipynb
- genetic-programming
- framework
Delaunay triangulation for convex polygon
Integrated pipeline for multiplexed image analysis
- multiplexed-imaging
- python
:spider_web: Compute interesting points, areas, and volumes in simplex meshes of any dimension.
- mathematics
- python
- pypi
- voronoi-diagram
A Swift port of the Cassowary linear constraint solver
- cassowary
- constraint-solver
- swift
Accelerated tensor operations and dynamic neural networks based on reverse mode automatic differentiation for every device that can run Swift - from watchOS to Linux
- deep-learning
- deep-neural-networks
- gradient-descent
- automatic-differentiation
hsolve：电磁仿真大规模非正定厄密特征值求解。Certified shift-invert eigensolver for large sparse Hermitian (indefinite, generalized) eigenproblems from EM simulation: MUMPS LDLᵀ + block Krylov-Schur + Sylvester-inertia completeness certificate.
- computational-electromagnetics
- cpp17
- eigensolver
- eigenvalues
Derive: Symbolic Math Engine for Derivatives, Integrals, and Vector Operations on Windows
- derivatives
- derive-installer
- derive-setup
- download-derive
Advanced Windows Mathematics Education Tool with Computational Engine and 2D/3D Visualization
- 2d-graphic-viewer
- 3d-graphic-viewer
- engineers-software
- equation-editor
A math and collisions library for Lua.
- math
- intersection
- lua
Toolbox for the analysis of smFISH images.
- pattern-classification
- rna-localization
- segmentation
- smfish
The Mines Java Toolkit
- geophysics
- scientific-computing
- visualization
- mines-java-toolkit
slick is a simple to use polygon collision library inspired by bump.lua
The Massively Parallel Quantum Chemistry program, MPQC, computes properties of atoms and molecules from first principles using the time independent Schrödinger equation.
Variations on Kirby & Paris' hydra battles and other entertaining math in Coq (collaborative, documented, includes exercises) [maintainer=@Casteran]
- coq
- hydra-battles
- ordinal-notations
- formal-proofs