Common Lisp package for simple two dimensional computational geometry.
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MCP server for spatial transcriptomics analysis through natural language interfaces.
- bioinformatics
- cell-communication
- deconvolution
- machine-learning
Graph Theory [maintainers=@chdoc,@damien-pous]
- coq
- graph-theory
- mathcomp
- docker-coq-action
Portability Environment for Fortran poor people
- fortran
- codes-portability
- precision
A cheminformatics extension for the SQLAlchemy database toolkit.
Generic, zero-alloc, 100%-test covered Quadtree for golang
- golang-library
- quadtree
- data-structures
- generics
💬 Trace citation chains for any concept across research papers and render them as an interactive graph.
- academic-research
- bibliography
- citation-graph
- cli
Updated infix.cl of the CMU AI repository, originally written by Mark Kantrowitz
- infix-notation
- common-lisp
- mathematics
A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources
- bioimage-analysis
- cell-classification
- computer-vision
- digital-pathology
2D triangulation library. Allows translating lines and polygons (both based on points) to the language of GPUs.
- triangulation
- computational-geometry
- golang
Multi-stage Riemannian flow matching for physically valid molecular docking, with GNINA scoring, PoseBusters filtering, CLI inference, and benchmarks.
- alphafold3
- docking
- drug-design
- drug-discovery
A common lisp library that provides a numeric type with optional unit and/or uncertainty for computations with automatic error propagation.
Multidimensional array similar to NumPy and NArray
- matrix
- linear-algebra
- colt
- ruby
Partial Commutative Monoids
- partial-commutative-monoid
- separation-logic
- coq
- coq-library
Multigrate: multiomic data integration for single-cell genomics
📐✏️ Slides from my talk on Mathematics of Animation @ .concat() 2018
A weather server supporting Campbell Scientific and Davis Instruments stations with lots of data-sharing options
CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer
- cancer
- foundation-model
- single-cell
Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network
Qurry (was) a prototype for a functional quantum programming language. It incorporated many aspects of functional programming (Haskell, Clojure), but also took standard design philosophies from C++, Python, and other "traditional" languages. [category: quantum]
A implementation of Shor's algorithm written in Python calling Q# for the quantum part
- qsharp
- python3
A metaheuristic optimization framework
- optimization
- optimization-algorithms
- optimization-methods
- genetic-algorithm
Generic 2D grid
- astar-algorithm
- dda-algorithm
- dejkstra
- golang
A pure Crystal Vector Math library
- crystal
- vector
- quaternion