Repository Index

2D triangulation library. Allows translating lines and polygons (both based on points) to the language of GPUs.

• triangulation
• computational-geometry
• golang

Multi-stage Riemannian flow matching for physically valid molecular docking, with GNINA scoring, PoseBusters filtering, CLI inference, and benchmarks.

• alphafold3
• docking
• drug-design
• drug-discovery

Multigrate: multiomic data integration for single-cell genomics

A weather server supporting Campbell Scientific and Davis Instruments stations with lots of data-sharing options

Multi-platform quantum programming library, written in TypeScript, good for JS/NodeJS

• quantum-computing
• quantum-programming-language
• quantum

CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer

• cancer
• foundation-model
• single-cell

Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network

A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders

Qurry (was) a prototype for a functional quantum programming language. It incorporated many aspects of functional programming (Haskell, Clojure), but also took standard design philosophies from C++, Python, and other "traditional" languages. [category: quantum]

DE-9IM spatial predicate library implemented in Javascript.

• de-9im
• spatial
• predicates
• javascript

A implementation of Shor's algorithm written in Python calling Q# for the quantum part

• qsharp
• python3

A metaheuristic optimization framework

• optimization
• optimization-algorithms
• optimization-methods
• genetic-algorithm

A Swift Playground visualizing gravity based on Einstein's Theory of General Relativity

tiny linear interpolation library for go

• linear-interpolation
• golang
• piecewise
• linear

A pure Crystal Vector Math library

• crystal
• vector
• quaternion

Arbitrary Precision Library for Delphi with Support for Integer and Floating Point Computations.

Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics

• bioinformatics
• cell-type-deconvolution
• computational-biology
• deconvolution

Java Scientific Computing Library - Signal Processing, FFT, Filters, PSD, DCT, SciPy-like APIs for JVM & Android used in Machine Learning and Data Science.

• android
• java
• python
• scipy

Decimal handling as value object instead of plain strings or floats.

An integration of PlayCanvas with the 2D physics engine p2.js

PyTorch implementation of "TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarity Augmentation"

Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.

• microscopy
• image-processing
• segmentation
• biology

Nova DSO Tracker is an open-source Flask application for astrophotographers, providing real-time tracking of deep-sky objects' altitude, observability prediction, and integration with Stellarium and SIMBAD databases.

• astrophotography
• astronomy
• ephem
• flask

ODE system solver made simple. For IVPs (initial value problems).

• runge-kutta-fehlberg
• runge-kutta
• simulation
• ode-solver