Repository Index

OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.

🏃 The go-to single-cell Foundation Model

• batch-correction
• cell-biology
• celltype-annotation
• denoising

LLM for Drug Editing, ICLR 2024

• chatgpt
• conversation
• drug
• drug-discovery

Scientific computing in pure Crystal

• crystal
• linear-algebra
• machine-learning
• autograd

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

• disentanglement
• drug-discovery
• genomics
• perturbation

Batched NVIDIA MotionBricks: generate the motion of hundreds of characters in one model call.

• character-animation
• crowd-simulation
• motion-generation
• motionbricks

TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524

• self-attention
• compound-protein-interaction
• transformercpi
• structure-free-virtual-sreening

The Next Generation Logic Library

The source code for the Menge crowd simulation framework

Optimising chemical reactions using machine learning

• chemistry
• machine-learning
• optimization
• bayesian-optimization

TUM Roborace Team Software Stack - Vehicle Simulation

Safe Bayesian Optimization

• gaussian-processes
• optimization
• robotics
• reinforcement-learning

Interpretable bilinear attention network with domain adaptation improves drug-target prediction.

Automated 3D brain registration with support for multiple species and atlases.

• registration
• atlases
• brain
• neuroscience

Data visualisation web components for the life sciences.

• biohackeu21
• bioinformatics
• visualization
• webcomponents

Date and time manipulation for modern Fortran

• fortran
• datetime
• timedelta
• strftime

Chemical 2D structure editor application/applet based on the Chemistry Development Kit

• blueobelisk
• java
• chemistry

Accurate and efficient spot detection for microscopy data

Numpy-like library in swift. (Multi-dimensional Array, ndarray, matrix and vector library)

• swift
• math
• ndimensional-arrays
• ndarray

⚡ Open-source software for deep learning-based digital pathology

• deep-learning
• machine-learning
• digital-pathology
• computational-pathology

RTree2D is a 2D immutable R-tree for ultra-fast nearest and intersection queries in plane and spherical coordinates

• scala
• rtree
• 2d
• str

A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design

• protein
• protein-sequences
• protein-design
• representation-learning

The repository host gives no description.

:pushpin: State of the art point location and neighbour finding algorithms for region quadtrees, in Go

• quadtree
• go