Repository Index

A cheminformatics extension for the SQLAlchemy database toolkit.

Generic, zero-alloc, 100%-test covered Quadtree for golang

• golang-library
• quadtree
• data-structures
• generics

💬 Trace citation chains for any concept across research papers and render them as an interactive graph.

• academic-research
• bibliography
• citation-graph
• cli

A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources

• bioimage-analysis
• cell-classification
• computer-vision
• digital-pathology

2D triangulation library. Allows translating lines and polygons (both based on points) to the language of GPUs.

• triangulation
• computational-geometry
• golang

Multi-stage Riemannian flow matching for physically valid molecular docking, with GNINA scoring, PoseBusters filtering, CLI inference, and benchmarks.

• alphafold3
• docking
• drug-design
• drug-discovery

Multidimensional array similar to NumPy and NArray

• matrix
• linear-algebra
• colt
• ruby

NASA/JPL SPICE Toolkit for C – patched for cross-platform compatibility

• astronomy
• astronomical-algorithms
• celestial-mechanics
• nasa

🛫 Fixed-Point Decimals

• encoding
• numerics
• performance
• go

WebGL molecule viewer made with Babylon.js

Genetic Algorithm and Particle Swarm Optimization

• genetic-algorithm
• particle-swarm-optimization
• golang
• go

Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network

3D shape analysis using deep learning

• cancer-biology
• cell-biology
• deep-learning
• geometric-deep-learning

A Swift Playground visualizing gravity based on Einstein's Theory of General Relativity

Collection of basic math routines in Ada

tiny linear interpolation library for go

• linear-interpolation
• golang
• piecewise
• linear

Generic 2D grid

• astar-algorithm
• dda-algorithm
• dejkstra
• golang

Single-cell fluorescence microscopy data analysis

• microscopy
• fluorescence-microscopy-imaging

Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics

• bioinformatics
• cell-type-deconvolution
• computational-biology
• deconvolution

Java Scientific Computing Library - Signal Processing, FFT, Filters, PSD, DCT, SciPy-like APIs for JVM & Android used in Machine Learning and Data Science.

• android
• java
• python
• scipy

Some useful additons for makepkg for archlinux

• archlinux
• bolt
• clang
• gcc

Decimal handling as value object instead of plain strings or floats.

PyTorch implementation of "TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarity Augmentation"

Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.

• microscopy
• image-processing
• segmentation
• biology