Schema and generated objects for biolink data model and upper ontology
- biolink
- monarchinitiative
- gene-ontology
- datamodel
Repository Index
78,850 visible repositories in the index
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RNA-seq prediction with deep convolutional neural networks.
TriWild: Robust Triangulation with Curve Constraints
- traingulation
- meshing
- geometry-processing
A TLA+ interpreter and model checker in TypeScript
- formal-verification
- tlaplus
- typescript
Bi-Directional Equivariant Long-Range DNA Sequence Modeling
The RAW Complex.js is a complex numbers library written in JavaScript
- complex-numbers
- vector
- trigonometric-functions
- javascript
MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)
Simple and lightweight computational geometry library for .Net
CoqHammer: An Automated Reasoning Hammer Tool for Rocq - Proof Automation for Dependent Type Theory
- coq
- hammer
- automation
- proof-search
Azure friendly DICOMweb part 18 .NET server with qido-rs, wado-rs, stow-rs, wado-uri RESTful implementation
- dicom
- dicomweb
- dicomcloud
- wado
OPEM (Open Source PEM Fuel Cell Simulation Tool)
- chemistry
- pem
- fuel-cell
- opem
Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome
- cancer-genomics
- cnv-detection
- single-cell
- phylogeny
Automated 3D cell detection in very large images
- microscopy
- cell-detection
- deep-learning
- image-analysis
High performance computational platform in Python for the spectral Galerkin method
- spectral-methods
- galerkin
- fenics
- turbulence
Allocators, I/O streams, math, geometry, image and audio processing for D
- utility-library
- dlang
- linear-algebra
- computational-geometry
D3 plugin which computes a treemap based on a Voronoi tesselation
a unified framework for modeling chemically reactive systems
- chemical-equilibrium
- chemical-kinetics
- reactive-transport
- chemical-reactions
Multiresolution Adaptive Numerical Environment for Scientific Simulation
:spider_web: Simple mesh generator inspired by distmesh.
- mesh
- finite-elements
- mathematics
- mesh-generation
TranslatedAcademic research library for DSH — search, cite, approve imports, hand off notes. Also: a research literature library plugin for DeepSeek Harness: search papers, include sources, approve imports into the library, and hand off note leads to other plugins in the same session.
- academic
- agentero
- ai-agents
- citations
A formalization of geometry in Coq based on Tarski's axiom system
A gallery of animations in statistics and utilities to create animations
- r
- r-package
- animation
- statistics
A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
Medical LLM agent and MRI segmentation workspace built on PharmaLLM, with LangGraph, vLLM, and BEU-Net.