Repository Index

Sparse matrix formats for linear algebra supporting scientific and machine learning applications

• go
• golang
• matrix
• scientific-computing

A dataset, API, and parser for USDA plant hardiness zones.

• usda
• api
• plants
• farm

OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.

🏃 The go-to single-cell Foundation Model

• batch-correction
• cell-biology
• celltype-annotation
• denoising

LLM for Drug Editing, ICLR 2024

• chatgpt
• conversation
• drug
• drug-discovery

Scientific computing in pure Crystal

• crystal
• linear-algebra
• machine-learning
• autograd

Fork of https://gitlab.mpcdf.mpg.de/mtr/pocketfft to simplify external contributions

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

• disentanglement
• drug-discovery
• genomics
• perturbation

A framework for high-performance domain decomposition methods.

• c-plus-plus
• linear-algebra
• python
• fortran

Batched NVIDIA MotionBricks: generate the motion of hundreds of characters in one model call.

• character-animation
• crowd-simulation
• motion-generation
• motionbricks

TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524

• self-attention
• compound-protein-interaction
• transformercpi
• structure-free-virtual-sreening

Mission-control style spacecraft tracker in Rust: live ISS, Dragon, Hubble, JWST and Roman orbits, passes and schedules. Retro CRT themes, and a mode for Raspberry Pi + composite CRT.

The Next Generation Logic Library

The source code for the Menge crowd simulation framework

Optimising chemical reactions using machine learning

• chemistry
• machine-learning
• optimization
• bayesian-optimization

Safe Bayesian Optimization

• gaussian-processes
• optimization
• robotics
• reinforcement-learning

Interpretable bilinear attention network with domain adaptation improves drug-target prediction.

Automated 3D brain registration with support for multiple species and atlases.

• registration
• atlases
• brain
• neuroscience

Data visualisation web components for the life sciences.

• biohackeu21
• bioinformatics
• visualization
• webcomponents

The repository host gives no description.

OFF, Open source Finite volume Fluid dynamics code

• fluid-dynamics
• fortran
• oop
• cfd

Accurate and efficient spot detection for microscopy data

Numpy-like library in swift. (Multi-dimensional Array, ndarray, matrix and vector library)

• swift
• math
• ndimensional-arrays
• ndarray

⚡ Open-source software for deep learning-based digital pathology

• deep-learning
• machine-learning
• digital-pathology
• computational-pathology