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25–37 of 37 · Most stars

Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.

An open-source imaging workbench for making and studying SDR and HDR images from sensor data

Efficient and expressive arrayed vector math library with multi-threading and CUDA support in Common Lisp.

ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.

  • stitching
  • microscopy
  • microscopy-images
  • fluorescence-microscopy-imaging

Imagej macro to calculate the MTF based on a knife edge measurement

  • imagej-macro
  • electron-microscopy
  • image-analysis
  • x-ray-imaging

A Python package to analyze matrix fiber orientation and intensity around cells as a proxy for cellular forces. Also measures alignment relative to X/Y axes, points and lines, with optional masks, a Python API and browser tools for analysis and group comparisons.

  • imaging
  • microscopy
  • contractility
  • collagen

🔬Python package for high-throughput single-cell imaging analysis.

  • microscopy-image-analysis
  • single-cell-analysis