TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.
- medical-imaging
- medical-ai
- deep-learning
- machine-learning
Repository Index
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Fast NumPy array functions written in C
- c
- python
- numpy
- fast
A lean C++ library for working with point cloud data
- point-cloud
- icp
- ransac
- convex-hull
Cloud-native genomic dataframes and batch computing
- genetics
- vcf
- genomics
- gwas
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
Public/backup repository of the GROMACS molecular simulation toolkit. Please do not mine the metadata blindly; we use https://gitlab.com/gromacs/gromacs for code review and issue tracking.
C library for high-throughput sequencing data formats
- htslib
- bioinformatics
- sam
- bam
Precision Medicine Knowledge Graph (PrimeKG)
- knowledge-graph
- precision-medicine
- therapeutics
- bioinformatics
MySQL Spatial Data Extension integration with Laravel.
Throw in the towel.
- dotnet
- towel
- csharp
- library
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
- deep-learning
- protein-sequences
- protein-structure
- semi-supervised-learning
Cosette is an automated SQL solver.
Interactive network visualization in Python and Dash, powered by Cytoscape.js
- plotly-dash
- plotly
- dash
- cytoscape
Fast, sensitive and accurate integration of single-cell data with Harmony
Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data
The Point Processing Toolkit (pptk) is a Python package for visualizing and processing 2-d/3-d point clouds.
- pointclouds
- 3-d
- visualization
- lidar
Module for statistical learning, with a particular emphasis on time-dependent modelling
- machine-learning
- python
- point-process
- optimization
Spatial Single Cell Analysis in Python
- single-cell-rna-seq
- single-cell-genomics
- spatial-transcriptomics
- spatial-analysis
R package for detecting doublets in single-cell RNA sequencing data
Main yt repository
- data
- visualization
- analysis
- python
Molecular Processing Made Easy.
- python
- molecule
- rdkit
- drug-discovery
Dicoogle - Open Source PACS
- dicoogle
- dicom
- pacs
- medical-imaging
A library provides spatial data and geometric algorithms
- geometry-library
- gis
- geospatial
- golang
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
- dataset
- dna
- dna-processing
- dna-training