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Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
Exascale multiphase flow solver — 2025 Gordon Bell Prize Finalist | 200T grid points on 43K+ GPUs
Source code for "DeepDTA: deep drug-target binding affinity prediction"
Fundamentals 5 Code Library for FreePascal and Delphi
CEED Library: Code for Efficient Extensible Discretizations
Open source math and physics engine that executes MATLAB-syntax code. Features a modern compiler, automatic GPU acceleration for large calculations, and support for math on geometry / FEA calculations.
Code that makes the Iowa Environmental Mesonet run, or run into the ground.
The implementation code for "DAGAN: Deep De-Aliasing Generative Adversarial Networks for Fast Compressed Sensing MRI Reconstruction"
An automatic code generator for nonlinear model predictive control (NMPC) and the continuation/GMRES method (C/GMRES) based numerical solvers for NMPC
Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
The source code for the Menge crowd simulation framework
OFF, Open source Finite volume Fluid dynamics code
Learning cell communication from spatial graphs of cells
code to run sei and obtain sei and sequence class predictions
Autonomous multi-agent framework to optimize scientific software
Portability Environment for Fortran poor people
Matlab codes that convert a RGBD image into a cad like model. This code is released as a part of my PhD dissertation.
StaDynA: Addressing the Problem of Dynamic Code Updates in the Security Analysis of Android Applications
Compiler & Runtime for 'Almost Binary'. Code in platform-independent binary and utilize high-level data structures and state-of-the-art libraries (e.g. quantum computing, blockchain, ..)
A fast Fortran formatter, written in Rust
Local OpenAlex database with 284M+ works, abstracts, and semantic search
A browser workspace connecting research projects, apps, and collaborators