A list of schools and researchers in computational neuroscience
- awesome-list
- awesome
- computational-neuroscience
- neuroscience
Repository Index
47,133 repositories indexed
25–48 of 77 · Most stars
Qhull development for www.qhull.org -- Qhull 2020.2 (8.1-alpha1) at https://github.com/qhull/qhull/wiki
- qhull
- computational-geometry
- convex-hull
- delaunay-triangulation
Pathology Foundation Model - Nature Medicine
- foundation
- foundation-model
- histopathology
- mahmoodlab
OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research
Segment Anything for Microscopy
- microscopy-images
- segment-anything
- segmentation
- cell-segmentation
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
- calcium-imaging
- deconvolution
- source-extraction
- motion-correction
A Go package for engineering organisms.
- synthetic-biology
- synbio
- genetic-engineering
- molecular-biology
Interactive network visualization in Python and Dash, powered by Cytoscape.js
- plotly-dash
- plotly
- dash
- cytoscape
Vision-Language Pathology Foundation Model - Nature Medicine
- bioimage-analysis
- bioimage-informatics
- conch
- foundation-model
Curated list of open-access/open-source/off-the-shelf resources and tools developed with a particular focus on German
- nlp
- corpus-linguistics
- german-language
- computational-linguistics
Official repository for the ProteinGym benchmarks
- benchmark
- computational-biology
- protein
- protein-design
Tools for computational pathology
- machine-learning
- digital-pathology
- computational-pathology
- biomedical-image-processing
Python-centric Cookiecutter for Molecular Computational Chemistry Packages
- cookiecutter
- python-packages
- molecular-sciences
- conda-environment
A py.test plugin to validate Jupyter notebooks
- ipython-notebook
- jupyter-notebook
- python
- testing
Exascale multiphase flow solver — 2025 Gordon Bell Prize Finalist | 200T grid points on 43K+ GPUs
- gpu
- exascale
- cfd
- fortran
Parsers and algorithms for computational chemistry logfiles
- python
- computational-chemistry
- quantum-chemistry
Software for humanities scholars using quantitative or computational methods.
- awesome-list
- awesome
- digital-humanities
- dh-tools
V library to develop Artificial Intelligence and High-Performance Scientific Computations
- v
- hacktoberfest
- linear-algebra
- optimization
Fusing Histology and Genomics via Deep Learning - IEEE TMI
- pathomic
- fusion
- multimodal
- pathology
One open-source modeler for structures, heat and fluids, built from scratch in pure Rust: parametric part in, verified results out. Automatic all-hex and tet meshing, our own nonlinear implicit and explicit FEA, heat transfer and lattice Boltzmann CFD — every result checked against theory. For engineers and AI agents alike. Free, forever.
- cae
- cfd
- computational-mechanics
- explicit-dynamics
A curated list of NLP resources for Hungarian
- nlp
- natural-language-processing
- text-mining
- information-retrieval
Simple and lightweight computational geometry library for .Net
High performance computational platform in Python for the spectral Galerkin method
- spectral-methods
- galerkin
- fenics
- turbulence
Allocators, I/O streams, math, geometry, image and audio processing for D
- utility-library
- dlang
- linear-algebra
- computational-geometry