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Tags: Science and math
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25–48 of 77 · Most stars

C++ library for solving large sparse linear systems with algebraic multigrid method

  • amg
  • c-plus-plus
  • sparse-linear-systems
  • opencl

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

  • deep-learning
  • protein-sequences
  • protein-structure
  • semi-supervised-learning

A Go package for engineering organisms.

  • synthetic-biology
  • synbio
  • genetic-engineering
  • molecular-biology

VexCL is a C++ vector expression template library for OpenCL/CUDA/OpenMP

  • opencl
  • cuda
  • c-plus-plus
  • gpgpu

ACADO Toolkit is a software environment and algorithm collection for automatic control and dynamic optimization. It provides a general framework for using a great variety of algorithms for direct optimal control, including model predictive control, state and parameter estimation and robust optimization.

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

  • histopathology-images
  • microscopy
  • sliding-windows
  • medical-image-analysis

Exascale multiphase flow solver — 2025 Gordon Bell Prize Finalist | 200T grid points on 43K+ GPUs

  • gpu
  • exascale
  • cfd
  • fortran

Universal cheminformatics toolkit, utilities and database search tools

Native R and Python sample-deletion robustness for omics: candidate certificates, minimum deletion bounds, Bioconductor model refits and donor-level pseudobulk

Azure friendly DICOMweb part 18 .NET server with qido-rs, wado-rs, stow-rs, wado-uri RESTful implementation

  • dicom
  • dicomweb
  • dicomcloud
  • wado

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk