Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
- histopathology-images
- microscopy
- sliding-windows
- medical-image-analysis
Large collection of number systems providing custom arithmetic for mixed-precision algorithm development and optimization for AI, Machine Learning, Computer Vision, Signal Processing, CAE, EDA, control, optimization, estimation, and approximation.
- arithmetic
- integer-arithmetic
- fixed-point-arithmetic
- rational-arithmetic
open source software for bidimensional and tridimensional remeshing
- mesh
- mesh-adaptation
- anisotropic-mesh-adaptation
- isotropic-mesh-adaptation
A C++14-compatible physical units library with no dependencies and a single-file delivery option. Emphasis on safety, accessibility, performance, and developer experience.
- cpp
- cpp14
- cpp14-library
- dimensional-analysis
A High-Level Abstraction Framework for Quantum Algorithms
V library to develop Artificial Intelligence and High-Performance Scientific Computations
Quantum Computer Library for Everyone
Cirno's Perfect Math Library: Just about everything you need for 2D/3D games. Hopefully.
One open-source modeler for structures, heat and fluids, built from scratch in pure Rust: parametric part in, verified results out. Automatic all-hex and tet meshing, our own nonlinear implicit and explicit FEA, heat transfer and lattice Boltzmann CFD — every result checked against theory. For engineers and AI agents alike. Free, forever.
- cae
- cfd
- computational-mechanics
- explicit-dynamics
The universe in numbers. Free, open-source calculators for everything countable.
Native R and Python sample-deletion robustness for omics: candidate certificates, minimum deletion bounds, Bioconductor model refits and donor-level pseudobulk
TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524
- self-attention
- compound-protein-interaction
- transformercpi
- structure-free-virtual-sreening
Chemical 2D structure editor application/applet based on the Chemistry Development Kit
A strongly-typed genetic programming framework for Python
- python
- ipynb
- genetic-programming
- framework
CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework
Accelerated tensor operations and dynamic neural networks based on reverse mode automatic differentiation for every device that can run Swift - from watchOS to Linux
PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturbations at bulk and single-cell levels.
A simple ffi-accelerated vector library for everyone
a simple vector library for Lua based on the PVector class from processing
A collection of general utility and mathematical functions for GameMaker Studio 2 (Version 2.3).
Quartz - A Crystal Modeling & Simulation framework
scPair: Boosting single cell multimodal analysis by leveraging single cell atlases and implicit feature selection
A simple ffi-accelerated vector library for everyone with support for z-axis
a fairly simple solar system simulator