Repository Index

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

• sequence-alignment
• edit-distance
• levehnstein-distance
• library

U-Net Brain Tumor Segmentation

• tensorflow
• tensorlayer
• unet
• medical-imaging

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

• histopathology-images
• microscopy
• sliding-windows
• medical-image-analysis

RNA Velocity generalized through dynamical modeling

The fastest automatic differentiation library for C++, with Python bindings. Forward, adjoint and higher-order derivatives, checkpointing, Eigen support and JIT. Reproducible benchmarks against CppAD, Adept and autodiff.

• automatic-differentiation
• aad
• algorithmic-differentiation
• autodiff

A High-Level Abstraction Framework for Quantum Algorithms

V library to develop Artificial Intelligence and High-Performance Scientific Computations

• v
• hacktoberfest
• linear-algebra
• optimization

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

• hubmap
• imaging
• openmicroscopy
• ome-tiff

A lightweight library to calculate tensors in Swift, which has similar APIs to TensorFlow's

OpenAeroStruct is a lightweight tool that performs aerostructural optimization using OpenMDAO.

• openmdao
• optimization
• aerodynamics
• open-source

City Energy Analyst (CEA) is an open-source urban building energy modeling (UBEM) platform and computation tool for the design of low-carbon and highly efficient cities.

• python
• urban-design
• urban-analytics
• ubem

CEED Library: Code for Efficient Extensible Discretizations

• ceed
• high-order
• exascale-computing
• api

Simple and lightweight computational geometry library for .Net

High performance computational platform in Python for the spectral Galerkin method

• spectral-methods
• galerkin
• fenics
• turbulence

Wide-Integer implements a generic C++ template for uint128_t, uint256_t, uint512_t, uint1024_t, etc.

• high-performance
• embedded-systems
• multiprecision
• numerical

Free (GPL) Common Lisp data analysis library with emphasis on modularity and conceptual clarity.

A high-performance, high precision, zero allocation fixed-point decimal library for financial applications

• golang
• high-performance
• zero-allocation
• money

Practical volume computation and sampling in high dimensions

• geometry
• statistics
• polyhedral-computations
• random-walk

Translated天气战士 (Weather Fighter, "weather warrior") Weather Fighter —— Just honestly looking at the weather is boring, isn't it?

A Python package for molecular docking with an extensive, highly-curated dataset and a set of realistic benchmark tasks for drug discovery.

Open-source software for exploring and analyzing large, high-dimensional image-derived data.

• cellprofiler-analyst
• cellprofiler
• image-analysis
• machine-learning

A framework for high-performance domain decomposition methods.

• c-plus-plus
• linear-algebra
• python
• fortran

Data visualisation web components for the life sciences.

• biohackeu21
• bioinformatics
• visualization
• webcomponents

OFF, Open source Finite volume Fluid dynamics code

• fluid-dynamics
• fortran
• oop
• cfd