A versatile pairwise aligner for genomic and spliced nucleotide sequences
- bioinformatics
- sequence-alignment
- spliced-alignment
- genomics
Repository Index
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Spectral simulation of analog photography processes
Large Language-and-Vision Assistant for Biomedicine, built towards multimodal GPT-4 level capabilities.
Source code of PyGAD, a Python 3 library for building the genetic algorithm and training machine learning algorithms (Keras & PyTorch).
- python
- genetic-algorithm
- optimization
- numpy
Read, modify and write DICOM files with python code
- dicom
- pydicom
- python
MMseqs2: ultra fast and sensitive search and clustering suite
- bioinformatics
- sequence-clustering
- profile-search
- sequence-search
A library for differentiable nonlinear optimization
- differentiable-optimization
- robotics
- embodied-ai
- nonlinear-least-squares
The Classiq Library is the largest collection of quantum algorithms and applications. It is the best way to explore quantum computing software. We welcome community contributions to our Library 🙌
- quantum-algorithms
- quantum-software
- quantum-applications
- quantum-open-source
3D modeling in Python, built for LLMs.
Fast, modern C++ DSP framework, FFT, Sample Rate Conversion, FIR/IIR/Biquad Filters (SSE, AVX, AVX-512, ARM NEON, RISC-V RVV)
Store files as YouTube videos == infinite disk space
Linear algebra, eigenvalues, FFT, Bessel, elliptic, orthogonal polys, geometry, NURBS, numerical quadrature, 3D transfinite interpolation, random numbers, Mersenne twister, probability distributions, optimisation, differential equations.
- scientific-computing
- linear-algebra
- differential-equations
- sparse-systems
GPGPU-Sim provides a detailed simulation model of contemporary NVIDIA GPUs running CUDA and/or OpenCL workloads. It includes support for features such as TensorCores and CUDA Dynamic Parallelism as well as a performance visualization tool, AerialVisoin, and an integrated energy model, GPUWattch.
Python package for compiling and analyzing quantum algorithms to simulate electronic structures.
- quantum-computing
- quantum-chemistry
- quantum-algorithms
- quantum-programming-language
Unified Communication X (mailing list - https://elist.ornl.gov/mailman/listinfo/ucx-group)
- rdma
- hpc
- networking
- infiniband
Shadow is a discrete-event network simulator that directly executes real application code, enabling you to simulate distributed systems with thousands of network-connected processes in realistic and scalable private network experiments using your laptop, desktop, or server running Linux.
- emulation
- simulation
- networking
- experimentation
High-performance automatic differentiation of LLVM and MLIR.
- enzyme
- llvm
- ad
- automatic-differentiation
The Control Toolbox - An Open-Source C++ Library for Robotics, Optimal and Model Predictive Control
- optimal-control
- model-predictive-control
- ilqr
- ilqg
Deep probabilistic analysis of single-cell and spatial omics data
- scrna-seq
- variational-bayes
- variational-autoencoder
- cite-seq
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
- itk
- insight-toolkit
- image-analysis
- medical-imaging
A java virus broadcast simulation
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
- artificial-intelligence
- deep-learning
- protein-folding
- attention-mechanism
🌎📡 TypeScript Astrodynamics Software for Non-Engineers. 3D Visualization of satellite data and the sensors that track them.
- space
- orbit
- radar
- satellite
EnergyPlus™ is a whole building energy simulation program that engineers, architects, and researchers use to model both energy consumption and water use in buildings.