cell detection in calcium imaging recordings
- imaging
- neuroscience
- data-analysis
Repository Index
47,133 repositories indexed
25–48 of 62 · Most stars
Tools for computational pathology
- machine-learning
- digital-pathology
- computational-pathology
- biomedical-image-processing
HDR Toolbox for processing High Dynamic Range (HDR) images into MATLAB and Octave
- hdr
- tone-mapping
- inverse-tonemapping
- tonemapping
Neural networks toolbox focused on medical image analysis
- python
- keras
- convolutional-neural-networks
- brain
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
- hubmap
- imaging
- openmicroscopy
- ome-tiff
⛵The missing fast imaging library for humans (not for machines).
Produce a sharp image of a planetary system object (moon, sun, planets) from many seeing-affected frames according to the "lucky imaging" technique.
Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging. The name Kaapana comes from the Hawaiian word kaʻāpana, meaning "distributor" or "part".
- imaging
- ai
- cloud-computing
- medical-imaging
Awesome list of software that I use to do research in medical imaging.
Automated 3D cell detection in very large images
- microscopy
- cell-detection
- deep-learning
- image-analysis
Deep and Machine Learning for Microscopy
- microscopy
- materials
- machine-learning
- materials-science
This script is made to collect the most valiable artifacts for foreniscs or incident reponse investigation rather than imaging the whole har drive.
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
- cancer-imaging-research
- radiomics
- radiomics-features
- machine-learning
AI-based pathology predicts origins for cancers of unknown primary - Nature
- histology
- pathology
- wsi-images
- histopathology
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
- python
- microscopy
- scripting
- automation
Interoperable web-based DICOM slide microscopy viewer and annotation tool
Object Pascal image loading, saving and manipulation library.
- pascal
- object-pascal
- delphi
- image
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
- neuroimaging
- reproducibility
- pipeline
- meta-analysis
To facilitate the introduction of ITU-R BT.2100 Hybrid Log-Gamma (HLG) production, BBC R&D have created a package of look-up tables (LUTs) that implement a range of key format conversions.
- high-dynamic-range
- high-dynamic-range-imaging
- television
- television-production
Integrated pipeline for multiplexed image analysis
- multiplexed-imaging
- python
An open-source imaging workbench for making and studying SDR and HDR images from sensor data
Simplifying image manipulation using GDI, Graphics32, OpenCV or Vampyre Imaging libraries
A list of awesome selected resources towards the application of machine learning in Biomedical/Healthcare Imaging, inspired by
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
- cell-annotation
- multiplexed-imaging
- mpif