An open-source application for biological image analysis
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Self-contained Japanese Morphological Analyzer written in pure Go
- japanese
- tokenizer
- nlp-library
- japanese-language
A Graph Library for Swift
- graph
- swift
- data-structure
- graph-algorithms
Logical multi-master PostgreSQL replication
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
- deep-learning
- protein-sequences
- protein-structure
- semi-supervised-learning
NodeJS Task List derived from the best! Create beautiful CLI interfaces via easy and logical to implement task lists that feel alive and interactive.
A caffeine driven, simplistic approach to benchmarking.
TTK - Topological Data Analysis and Visualization - Source Code
- topological-data-analysis
- visualization
- python
- paraview
Arithmetic and logical expressions modeled and visualized using protocol-oriented binary trees. 🌳
Enhanced PostgreSQL logical replication
- postgresql
- logical-replication
- golang
Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging. The name Kaapana comes from the Hawaiian word kaʻāpana, meaning "distributor" or "part".
- imaging
- ai
- cloud-computing
- medical-imaging
Streaming Postgres logical replication changes atleast-once over websockets
- postgresql
- logical-replication
- write-ahead-log
- websockets
MySQL Shell is a command line scriptable shell for MySQL, with support for logical backups, InnoDB Cluster management and more. It supports SQL, JavaScript and Python.
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
- omero
- java
- python
- server
Una lista de grupos de Slack en español para desarrolladores / A list of awesome Slack groups in Spanish for developers
Python package for image-based profiling
- cytominer
- microscopy
- morphological-profiling
- python
Generic graph data structures and algorithms for Go (Golang): dependency graphs (DAGs) with cycle checks and topological sort, BFS and DFS traversal, Dijkstra and other shortest paths, connectivity and partitioning. No dependencies.
- generic
- golang
- graph
- graph-algorithms
Modular and modern graph-theory algorithms framework in Java
- graph-algorithms
- graph-theory
- java
- algorithms
Collection of mathematical morphology methods and plugins for ImageJ
- image-processing
- image-analysis
- imagej
- fiji
An NLP library for Uralic languages such as Finnish, Skolt Sami, Moksha and so on. Also supporting some non-Uralic languages such as Spanish, French, Arabic, Swedish, Norwegian, Russian and English. LLMs, FSTs and More!
- nlp-library
- uralic-languages
- finnish
- sami
RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
- biological-images
- root
- painter
- segmentation
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
- r
- neuroanatomy-toolbox
- cran
- neuron
A set of protocols for Arithmetic, Statistics and Logical operations
Stream database events from PostgreSQL to Kafka
- postgresql
- events
- stream
- kafka