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Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

Tool for advanced mining for content on Github

  • gitminer
  • information-gathering-tool
  • git-mining-tool

A deep learning toolkit for healthcare AI: EHR (MIMIC, eICU, OMOP), clinical text, signals and imaging. 30+ models, reproducible pipelines.

Curated list of open-access/open-source/off-the-shelf resources and tools developed with a particular focus on German

  • nlp
  • corpus-linguistics
  • german-language
  • computational-linguistics

Desbordante is a high-performance data profiler that is capable of discovering many different patterns in data using various algorithms. It also allows to run data cleaning scenarios using these algorithms. Desbordante has a console version and an easy-to-use web application.

CogComp's Natural Language Processing Libraries and Demos: Modules include lemmatizer, ner, pos, prep-srl, quantifier, question type, relation-extraction, similarity, temporal normalizer, tokenizer, transliteration, verb-sense, and more.

🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)

  • awesome
  • biomedical
  • text-mining
  • information-extraction