Fast, sensitive and accurate integration of single-cell data with Harmony
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The APL programming language (a subset thereof) compiling to Common Lisp.
Sharing Updatable Models (SUM) on Blockchain
- blockchain
- ml
- ai
- economics
Spatial Single Cell Analysis in Python
- single-cell-rna-seq
- single-cell-genomics
- spatial-transcriptomics
- spatial-analysis
An open source library for building deep-linkable SwiftUI applications with composition, testing and ergonomics in mind
Keep Whale-chan consistently vivid in every generation: High-consistency character design specification, visual asset library, and agent creation suite.
- claude-code
- codex
- comics
- gemini
A compilation of 125+ free datasets for use in social science, applied microeconomics, data visualization, etc.
- applied-microeconomics
- data
- data-visualization
- dataset
Graph-linked unified embedding for single-cell multi-omics data integration
- bioinformatics
- deep-learning
- single-cell
- single-cell-multiomics
Cut AI context cost without trusting the compressor. Every reduction is reversible, byte-exact recoverable, and carries an auditable receipt. Local-first, works through proxy, MCP, SDK, or agent wrapper.
- ai-agents
- claude-code
- mcp
- token-optimization
ceejbot's talk from JSConfEU 2019
Tools for computational pathology
- machine-learning
- digital-pathology
- computational-pathology
- biomedical-image-processing
Multi-Omics Factor Analysis
- multi-omics
- factor-analysis
- mofa
Reference mapping for single-cell genomics
- single-cell
- deep-learning
- rna-seq-analysis
- data-integration
Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star
- dna
- language-model
- variant-effect-prediction
- genomics
Fusing Histology and Genomics via Deep Learning - IEEE TMI
- pathomic
- fusion
- multimodal
- pathology
Native R and Python sample-deletion robustness for omics: candidate certificates, minimum deletion bounds, Bioconductor model refits and donor-level pseudobulk
- bioinformatics
- exact-optimization
- metabolomics
- paired-data
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
- histology
- wsi-images
- pan-cancer-analysis
- genomics
Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome
- cancer-genomics
- cnv-detection
- single-cell
- phylogeny
Computational economics in Python
Genomic sequence storage, indexing and alignment inside PostgreSQL: https://bioseqdb.com/
- alignment
- bioinformatics
- biology
- database
A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
PyTorch Connectomics: segmentation toolbox for EM connectomics
- computer-vision
- neuroscience
- connectomics
- pytorch
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
- cancer-imaging-research
- radiomics
- radiomics-features
- machine-learning
Probabilistic cell segmentation for in situ spatial transcriptomics