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Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
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Encapsulate measurements and their units in Ruby and Ruby on Rails.
Supernodal sparse direct solver. https://portal.nersc.gov/project/sparse/superlu/
Native R and Python sample-deletion robustness for omics: candidate certificates, minimum deletion bounds, Bioconductor model refits and donor-level pseudobulk
Open Parser for Systematic IUPAC Nomenclature. Chemical name to structure conversion
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
Multi-dimensional Swift math
A Geometry library for Elixir that calculates spatial relationships between two geometries
Fork of https://gitlab.mpcdf.mpg.de/mtr/pocketfft to simplify external contributions
Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524
A library of mechanised undecidability proofs in the Coq proof assistant.
Axon/Myelin segmentation using Deep Learning
TranslatedAntifouling coating evidence panel: formulation sandbox, route biofouling stress, literature bounds. Simulation ≠ measurement. Live: https://simulator.jassyhong.top
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
An Elixir implementation of the CONREC algorithm for topographic or isochrone maps.
Tiny header-only C++17 library for lat/lng geometry: distance, bearing, area, point-in-polygon and path proximity
Native Haxe functions for graphical linear algebra (à la GLM: https://github.com/g-truc/glm/tree/master/glm)
The formal proof of the Odd Order Theorem
A Swift Playground visualizing gravity based on Einstein's Theory of General Relativity
Java Scientific Computing Library - Signal Processing, FFT, Filters, PSD, DCT, SciPy-like APIs for JVM & Android used in Machine Learning and Data Science.
ODE system solver made simple. For IVPs (initial value problems).
Computer Algebra for microcontrollers using https://github.com/micropython/micropython