Repository Index

:spider_web: Mesh optimization, mesh smoothing.

• python
• pypi
• mathematics
• physics

2D/3D simplicial mesh generator interface for Python (Triangle, TetGen, gmsh)

• python
• mesh-generation
• scientific-computing
• triangle

Junction Tree Variational Autoencoder for Molecular Graph Generation (ICML 2018)

Large collection of number systems providing custom arithmetic for mixed-precision algorithm development and optimization for AI, Machine Learning, Computer Vision, Signal Processing, CAE, EDA, control, optimization, estimation, and approximation.

• arithmetic
• integer-arithmetic
• fixed-point-arithmetic
• rational-arithmetic

Graph-linked unified embedding for single-cell multi-omics data integration

• bioinformatics
• deep-learning
• single-cell
• single-cell-multiomics

Advanced date, time and interval library for Java with sun/moon-astronomy and calendars like Chinese, Coptic, Ethiopian, French Republican, Hebrew, Hijri, Historic Christian, Indian National, Japanese, Julian, Korean, Minguo, Persian, Thai, Vietnamese

• java
• time4j
• calendar
• interval

Benchmarking analysis of data integration tools

Reference mapping for single-cell genomics

• single-cell
• deep-learning
• rna-seq-analysis
• data-integration

The official implementation of 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction (ICLR 2023)

• ai-for-science
• diffusion-models
• drug-design
• equivariant-networks

Image restoration for fluorescence microscopy

One open-source modeler for structures, heat and fluids, built from scratch in pure Rust: parametric part in, verified results out. Automatic all-hex and tet meshing, our own nonlinear implicit and explicit FEA, heat transfer and lattice Boltzmann CFD — every result checked against theory. For engineers and AI agents alike. Free, forever.

• cae
• cfd
• computational-mechanics
• explicit-dynamics

Open source math and physics engine that executes MATLAB-syntax code. Features a modern compiler, automatic GPU acceleration for large calculations, and support for math on geometry / FEA calculations.

• matlab
• rust
• jit-compiler
• linear-algebra

Schema and generated objects for biolink data model and upper ontology

• biolink
• monarchinitiative
• gene-ontology
• datamodel

:spider_web: Simple mesh generator inspired by distmesh.

• mesh
• finite-elements
• mathematics
• mesh-generation

A general library for geometry operations of union, intersections, difference, and xor

• computational-geometry
• union
• intersection
• xor

A Network Integration Approach for Drug-Target Interaction Prediction

A Python interface to access neuroanatomical atlases

• neuroscience
• python
• microscopy
• registration

A simple cross platform .NET API for Intel MKL

• mkl
• cross-platform
• matrix
• linear-algebra

An automatic code generator for nonlinear model predictive control (NMPC) and the continuation/GMRES method (C/GMRES) based numerical solvers for NMPC

• model-predictive-control
• nonlinear-model-predictive-control
• mpc
• nmpc

Python package for calculating reference/potential evapotranspiration (ETo).

A python Two Source Energy Balance model for estimation of evapotranspiration with remote sensing data

• source-energy-balance
• canopy
• soil
• radiometric-temperatures

Batched NVIDIA MotionBricks: generate the motion of hundreds of characters in one model call.

• character-animation
• crowd-simulation
• motion-generation
• motionbricks

The Next Generation Logic Library

Automated 3D brain registration with support for multiple species and atlases.

• registration
• atlases
• brain
• neuroscience